Monsanto claimed DuPont was using its Roundup Readyherbicide-tolerant trait outside the scope of the agreement.
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The soybean is designed to resist glyphosate Roundup Readyherbicides and produce increased yields for farmers.
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In May, Monsanto Co MON.N sued DuPont for unlawful use of it Roundup Readyherbicide tolerant technologies.
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It said it found no presence of its Roundup Readyherbicide-tolerant trait, which Monsanto refers to as CP4.
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In a separate case, the two companies are engaged in a bitter battle over Monsanto's Roundup Readyherbicide-tolerant trait technology for soybeans and corn.