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TGA provided single-nucleotide resolution for each binding site and delineated a highly specific sequence and structuremotif for Vts1 binding.
2
Using this representation, a structuremotif corresponds to a labeled clique that occurs frequently among the graphs representing the protein structures.
3
The pairwise distance constraints on each edge in a clique serve to limit the variation in geometry among different occurrences of a structuremotif.
4
Compared with contact graph representations, the number of spurious structuremotifs is greatly reduced.
5
RNA aptamers are structuredmotifs that bind to specific molecules.
6
We present an efficient constrained subgraph mining algorithm to discover structuremotifs in this setting.
7
The HIV-1 model contains all known structuredmotifs and previously unknown elements, including experimentally validated pseudoknots.
8
Structuremotifs are amino acid packing patterns that occur frequently within a set of protein structures.