The simulations capture spontaneous substrate binding of GlpT, driven by the positive electrostaticpotential of the lumen.
2
Starting from the linear Poisson-Boltzmann equation, we calculate the electrostaticpotential and the energy of such a charge distribution.
3
Resulting changes in shape, hydrogen bonding, and electrostaticpotential at the protein surface form a likely basis for signal transduction.
4
Moreover, molecular modelling allowed determining the electrostaticpotential density maps and the hydrogen bonds of antibiotics and the glass matrix.
5
This expression can be viewed as representing the electrostaticpotential generated by charges on a line in R 3 .
6
The net atomic charges and electrostaticpotential isosurfaces also give additional input to evaluate chemical and physical properties in such systems.
7
The histidine residues of the AAA+ domains insert into a narrow minor groove region with enhanced negative electrostaticpotential.
8
Comparing the electrostaticpotential (EP) of the latter with the EP of A-98881 the aromatic residues show excellent accordance.
9
The influence of the metal coordination on the strength of the interaction has been studied using molecular electrostaticpotential surface calculations.
10
These waters reside near Lys68, in an area with a positive electrostaticpotential that is able to attract and orient negatively charged ligands.
11
A procedure to derive the electrostaticpotential (ESP) for dynamic charge densities obtained from structure models or maximum-entropy densities is introduced.
12
In this paper, we examine the effect of increased positive electrostaticpotential in the active site upon the catalytic process with the enzyme mutation, Glu49Gln.
13
Analysis of the helical peptide of PDCD5-(1-26) indicates that the surface of this well-formed alpha-helix has a unique electrostaticpotential character.
14
Differences in the lipophilic and electrostaticpotentials among the pockets were identified.
15
Inosine differs from guanine only by loss of the N2 amino group, while both bases have similar electrostaticpotentials.
16
The ZrK-HSA complexations were analyzed using electrostaticpotentials, the chemical nature of amino acid residues, binding free energies, and secondary structures as parameters.