The model's design was guided and tested by a DOPC moleculardynamicssimulation.
2
This structure remains unaltered during the moleculardynamicssimulation at 298 K in chloroform.
3
Additional moleculardynamicssimulation studies confirmed the stability of nimbolide and signaling molecules binding interactions.
4
Selected encounter complexes were refined by moleculardynamicssimulation to generate structures of bound complexes.
5
A moleculardynamicssimulation experiment reported here and recent biochemical studies by others support this hypothesis.
6
We adapted this model, and optimized its parameters to reproduce the all-atom moleculardynamicssimulation structural data.
7
Solvated moleculardynamicssimulation reveals that the presence of water molecules affects the flexibility of the ligand-binding site.
8
This paper tests the aforementioned approach by comparing to a real-time Ehrenfest moleculardynamicssimulation of such a process.
9
The approach applied here serves as a prototype for qualitatively investigating other G-DNA molecules using moleculardynamicssimulation and free-energy analysis.
10
The recognition of the structure of amphoteric Congo red nanoparticles used for the scaffolding was based on the moleculardynamicssimulation.
11
The moleculardynamicssimulation demonstrated that the peak width was strongly related with the conformation of DNA chains adsorbed onto surface.
12
Understanding the protein-folding process is an outstanding issue in biophysics; recent developments in moleculardynamicssimulation have provided insights into this phenomenon.
13
The results of the moleculardynamicssimulation revealed that puerarin had higher stable binding at the 150-loop region of the NA protein.
14
Finally, structural analysis and moleculardynamicssimulation indicated that TPMT*27 was less stable than was the wild type TPMT allozyme.
15
Here we report the use of a coarse-grain moleculardynamicssimulation to predict the phases formed by two lipoplex systems: dsDNA-DOPE and dsDNA-DOPE-DOTAP.
16
For each antigenic site, ten scaffolds were selected for computational design, and the resulting epitope scaffolds were analyzed using structure-scoring functions and moleculardynamicssimulation.