WebLogo generates sequence logos, graphical representations of the patterns within a multiplesequencealignment.
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The BLAST, multiplesequencealignment and phylogenetic analysis tools were integrated for online data analysis.
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Many analyses for the detection of biological phenomena rely on a multiplesequencealignment as input.
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In this paper, we introduce RB-Finder, a fast and accurate distance-based window method to detect recombination in a multiplesequencealignment.
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A multiplesequencealignment was constructed, with the initial alignment taken from the previously published hidden Markov model and NMR constraints.
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Genome assembly, repeat detection, multiplesequencealignment, error detection and many other related applications use a k-mer counter as a building block.
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In order to identify functional hot spots, ET scans a multiplesequencealignment for residue variations that correlate with major evolutionary divergences.
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Multiplesequencealignment analysis exhibited six multiple sequence aligned blocks and five highly aligned blocks.
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Multiplesequencealignment was performed to calculate genome average nucleotide identity using the Kalgin program.
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Multiplesequencealignments (MSAs) are a prerequisite for a wide variety of evolutionary analyses.
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Additional information includes multiplesequencealignments, tab-separated files of functional and other attributes, and sequence similarity networks.
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We can discern five regions of high similarity from multiplesequencealignments between Drosophila and vertebrate huntingtins.
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Multiplesequencealignments demonstrate that this protein shares high identity with other thrombin-like enzymes from snake venoms.
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Multiplesequencealignments revealed unexpected homologies between the Gifsy-I Xis protein and two distinct subsets of polynucleotide binding proteins.
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In this study, we present a novel methodology to infer indel parameters from multiplesequencealignments (MSAs) based on simulations.
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Multiplesequencealignments and phylogenetic tree analysis revealed that 35 of the predicted proteins were new members of known families of lipolytic enzymes.